Labelled Cortical folds graph

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

Anatomist Show Nucleus Graph
Choose best recognition
Cortical Surface Parameterization Pipeline
Create Left Hemisphere Cortical Constraints Texture
Gyral Parcellation
Hip-Hop Cortical Parameterization
Hip-Hop Hemispheric Parameterization
Insular Pole Projection
Left hemisphere
Morphologist 2013
Morphologist 2015
Morphologist 2021
Parallel recognition
Parallel recognition CCRT
Pipeline 2012 parameterization left hemisphere
Recognition Error
Right hemisphere
Simplified Morphologist 2015
SPAM recognition, global registration
SPAM recognition, local registration
SPAM recognition, Markovian model
Sulcal Lines Extraction
Sulcal Lines Extraction With Options
Sulci Distance to Lesion
Sulci graph morphometry by subject
Sulci Labels consistency check
Sulci Recognition
Sulci Recognition (both hemispheres)
Sulci Recognition with ANN
Sulci Recognition with SPAM
Sulci Voronoi
Surface sulci extraction from DPF and labels projection
Transfer Sulci Labels

Associated formats

Graph and data

Associated ontology rules

  • flat :
    • ./L<filename>Base
    ./L<filename>Auto
    ./R<filename>Base
    ./R<filename>Auto
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/L<subject>_<sulci_recognition_session>_auto
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/R<subject>_<sulci_recognition_session>_auto
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/L<subject>_<sulci_recognition_session>_manual
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/R<subject>_<sulci_recognition_session>_manual
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/L<subject>_<sulci_recognition_session>_best
    {center}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/R<subject>_<sulci_recognition_session>_best
  • brainvisa-3.0 :
    • {protocol}/{subject}/sulci/default/L<subject>Base
    {protocol}/{subject}/sulci/default/R<subject>Base
    {protocol}/{subject}/sulci/default/default/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/default/default/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/default/{sulci_recognition_session}/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/default/{sulci_recognition_session}/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{sulciGraph}/L<subject>Base
    {protocol}/{subject}/sulci/{sulciGraph}/R<subject>Base
    {protocol}/{subject}/sulci/{sulciGraph}/default/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{sulciGraph}/default/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{sulciGraph}/{sulci_recognition_session}/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{sulciGraph}/{sulci_recognition_session}/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{acquisition}/default/L<subject>Base
    {protocol}/{subject}/sulci/{acquisition}/default/R<subject>Base
    {protocol}/{subject}/sulci/{acquisition}/default/default/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{acquisition}/default/default/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{acquisition}/default/{sulci_recognition_session}/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{acquisition}/default/{sulci_recognition_session}/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{acquisition}/{sulciGraph}/L<subject>Base
    {protocol}/{subject}/sulci/{acquisition}/{sulciGraph}/R<subject>Base
    {protocol}/{subject}/sulci/{acquisition}/{sulciGraph}/default/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{acquisition}/{sulciGraph}/default/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{acquisition}/{sulciGraph}/{sulci_recognition_session}/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/sulci/{acquisition}/{sulciGraph}/{sulci_recognition_session}/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/graphe/L<subject>Base
    {protocol}/{subject}/graphe/L<subject>_TO_vishnu_Base
    {protocol}/{subject}/graphe/L<subject>Auto
    {protocol}/{subject}/graphe/R<subject>Base
    {protocol}/{subject}/graphe/R<subject>_TO_vishnu_Base
    {protocol}/{subject}/graphe/R<subject>Auto
    {protocol}/{subject}/graphe/{sulci_recognition_session}/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/graphe/{sulci_recognition_session}/R<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/graphe/{acquisition}/L<subject>Base
    {protocol}/{subject}/graphe/{acquisition}/L<subject>_TO_vishnu_Base
    {protocol}/{subject}/graphe/{acquisition}/L<subject>Auto
    {protocol}/{subject}/graphe/{acquisition}/R<subject>Base
    {protocol}/{subject}/graphe/{acquisition}/R<subject>_TO_vishnu_Base
    {protocol}/{subject}/graphe/{acquisition}/R<subject>Auto
    {protocol}/{subject}/graphe/{acquisition}/{sulci_recognition_session}/L<subject>Auto_<sulci_recognition_session>
    {protocol}/{subject}/graphe/{acquisition}/{sulci_recognition_session}/R<subject>Auto_<sulci_recognition_session>
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/L<subject>_<sulci_recognition_session>_auto
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_auto/R<subject>_<sulci_recognition_session>_auto
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/L<subject>_<sulci_recognition_session>_manual
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_manual/R<subject>_<sulci_recognition_session>_manual
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/L<subject>_<sulci_recognition_session>_best
    {protocol}/{subject}/t1mri/{acquisition}/{analysis}/folds/{graph_version}/{sulci_recognition_session}_best/R<subject>_<sulci_recognition_session>_best

    Key attributes

  • flat :
    • manually_labelled ,  automatically_labelled ,  side
  • brainvisa-3.2.0 :
    • rescan ,  acquisition_date ,  time_point ,  time_duration ,  center ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  manually_labelled ,  automatically_labelled ,  best
  • brainvisa-3.0 :
    • protocol ,  subject ,  acquisition ,  sulciGraph ,  sulci_recognition_session ,  side ,  manually_labelled ,  automatically_labelled ,  graph_version ,  warped_to_vishnu
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis ,  graph_version ,  sulci_recognition_session ,  side ,  manually_labelled ,  automatically_labelled ,  best